Basic Information
VIS ID
TVIS10017995
Fusion event
HBV-chr13 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
969
Host Sequence
Chromosome
chr13
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
62148482/61574349 (Hg38)
End
62148482/61574349 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/374469; hsa-mir-1267/Downstream/4391981;
Nearest TSS
ENST00000623511/Upstream/146403; ENST00000455977/Downstream/455199;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1176438, chr13-CpG: 36/Downstream/2237237
Nearby gene
LOC105370231(-460) ;
Upstream sequence
AAAAACATAATAAGCATTTAGTAAATGTTGACTATCAGTGTTAAATACTGTTTACTCTCCAAATAAGTGAGCTGTAATACTTGTGTAATGCTTTCTCACA
Downstream sequence
GTTCCCATATGTCTTACTTAGTTTCTTCTTAATAATAGGTAATGTGTACAGCTCCTCGTTGtttttttgtttgtttgtttgagacagggttcttactccg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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