Basic Information
VIS ID
TVIS10017996
Fusion event
HBV-chr19 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
832
Host Sequence
Chromosome
chr19
Cytoband
q13.41
Reference genome
GRCh37/hg19
Start
51421264/50918008 (Hg38)
End
51421264/50918008 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/984871; hsa-let-7e/Downstream/288921;
Nearest TSS
ENST00000633603/Upstream/7270; ENST00000594939/Downstream/32177;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/5015, chr19-CpG: 31/Downstream/84650
Nearby gene
KLK4(-7263) ; PPIAP59(+8860) ;
Upstream sequence
AGCACAGTCTTCTCACTGGACAGCACTAGTTTTTTGCCTGGGAAGTCGTGGACAGTAACAGTGACTGGAACATCCCCTTGCGCGTCGTGGGCCTCCAGCA
Downstream sequence
AAACCCCACAAAAACCAAAGGAGCAGAAGTTATGATGGTGGCCTCATTAACCAAGGGCCTGGGCATCCCCCATTTTTCTAGCAGCAACCAAGCTGAGTCA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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