NOL4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018000
Fusion event
HBV-NOL4 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1717
Host Sequence
Chromosome
chr18
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
31504573/33924609 (Hg38)
End
31504573/33924609 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA18A
Target gene
NOL4
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-181a-5p ; hsa-mir-4776-3p ; hsa-mir-3972 ; hsa-mir-5006-5p ; hsa-mir-4755-3p ; hsa-mir-1202 ; hsa-mir-129-5p
Nearest miRNA
hsa-mir-1-2/Upstream/3625649; hsa-mir-122/Downstream/1667128;
Nearest TSS
ENST00000575820/Upstream/318968; ENST00000587528/Downstream/99030;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/345586, chr18-CpG: 45/Downstream/234474
Upstream sequence
CCTCTGCCCATGTCCTTCTGCAAAATTCCTGGCATCCTCCCAGGCCACTTCAGATGGAAGTTTTCTCTTCTTCTCTAATCTTTTAGTCCTTGTTTGTTCT
Downstream sequence
CACATATTTAGGGCTCACTGTGATAAAAAGGCAATGCTGTTTTATTCCTACAAAGTGATATAAAATTGTCGAGTCAAACAATTGTTGAGTGCAAAAGACA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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