RRBP1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018003
Fusion event
HBV-RRBP1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1716
Host Sequence
Chromosome
chr20
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
17625224/17644579 (Hg38)
End
17625224/17644579 (Hg38)
Location type
Intronic
Target gene
RRBP1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-335-5p ; hsa-mir-34a-5p ; hsa-mir-331-3p ; hsa-mir-92a-3p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-103a-2/Upstream/6994884; hsa-mir-1-1/Downstream/826036;
Nearest TSS
ENST00000382410/Upstream/1494; ENST00000427254/Downstream/14353;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/29741, chr20-CpG: 231/Downstream/36297
Upstream sequence
GTTAATCAATTTCCCTCTAGACAACACAAACTGCAGGCATGTGACTAACTTTGAAAGAACACCCATCATGTGGCTGCTGTCACCCTTGACCAGCCGTGGT
Downstream sequence
TGTAGTTACAGACTGGGCAGGGCAGCTGCTTCAGCCGGCGTCTAGCTGCTGGCTGCAAGGACATTTCCCCCTCCTGACTCAGAAAAGCGTCctgcgccgt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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