hsa-mir-422a _LIHC.png
TERT _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018006
Fusion event
HBV-TERT integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1628
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
End
1272399/1272284 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-4635/Upstream/205658; hsa-mir-10397/Downstream/37026;
Nearest CpG islands
chr5-CpG: 26/Target, None/Upstream, None/Downstream
Nearest cancer related gene
TERT(OG, No orient, 0)
Upstream sequence
catgtgggagtcccagtgctggctgctgccccttccccaaggagcttaaacagcaggcagctgcagctgtggtgctggtcacccctccccatgggagctt
Downstream sequence
CGGCAGAGGAGAGGGCATGAGCCACAAATGTGGCCTGCCCCGGCCAGAGCTGGGCACTTGTTTCTTCCGATCAGGACGTGTGGACCTGCGGCCAAGCCCG
Target sequence
CCTGGGGCGGGAAGACACAGGTGAGAGACGGGCAGGGCATGTGCTGGACATGCGTACACTCAAACCGAGCCACACACAGACACAGAACCTCATACACACAAACGACACGTCTACCATTCAGCCGGCAAACACCTCAGAAACATACCAGATGAGACCTCTGAACAAACAATCCCTGCTCCCCACTCTCACCATGCACTGGGGCGGCTGAAACAGATCCAGCCACAGGTGTGACCACATCCTTGCTCTGAATCATCA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate