Basic Information
VIS ID
TVIS10018010
Fusion event
HBV-chr2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1796
Host Sequence
Chromosome
chr2
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
123858353/123100777 (Hg38)
End
123858353/123100777 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/9379409; hsa-mir-10b/Downstream/4322760;
Nearest TSS
ENST00000437798/Upstream/27296; ENST00000423939/Downstream/343668;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1344827, chr2-CpG: 79/Downstream/923898
Upstream sequence
ggagggggggggggggggggggggggggggggggggggggggagggggggggggggggggggggggggggggggaggggggggggggagggggggggggg
Downstream sequence
GAGCTTTGACAAATTCAAGGTGTTGTTGGGACTCAGCTTTGGGAAACTAGATAGCAGGAAAGCCTTGGGCAGTCAACATCACTCACCATTTCCATAAGTA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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