CCDC33 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018014
Fusion event
HBV-CCDC33 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1799
Host Sequence
Chromosome
chr15
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
74619350/74327009 (Hg38)
End
74619350/74327009 (Hg38)
Location type
Intronic
Target gene
CCDC33
miRNAs that regulate target gene
hsa-mir-580-3p ; hsa-mir-4735-5p ; hsa-mir-6822-3p
Nearest miRNA
hsa-mir-10393/Upstream/1027030; hsa-mir-11181/Downstream/84348;
Nearest TSS
ENST00000557528/Upstream/7321; ENST00000568496/Downstream/12306;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/81266, chr15-CpG: 66/Downstream/38688
Upstream sequence
TTCTATAGAATAAGTATCTCTCCTTTGGGTCTTTCCTTTGCTGATCTTTGAAAAACCCAAGGCTTTTGTTCTCCTGTGGGCTCCGAAAGTCAGGACATGT
Downstream sequence
TGCGGGTGGGGGAAGCCGAGGAGGGAAAGCAGGTCCTTCAGTTTCCCACAGATGTAGAGGGAAGAGAGCATACAGACTGAGGGGTAAGCCAGGGCCGAGA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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