AP1AR _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018017
Fusion event
HBV-AP1AR integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
832
Host Sequence
Chromosome
chr4
Cytoband
q25
Reference genome
GRCh37/hg19
Start
113184622/112263466 (Hg38)
End
113184622/112263466 (Hg38)
Location type
Intronic
Target gene
AP1AR
miRNAs that regulate target gene
hsa-mir-93-5p ; hsa-mir-21-5p ; hsa-mir-4778-3p ; hsa-mir-190a-3p ; hsa-mir-302a-5p ; hsa-mir-5011-5p ; hsa-mir-141-5p ; hsa-mir-1277-5p
Nearest miRNA
hsa-mir-12113/Upstream/1402819; hsa-mir-1243/Downstream/384408;
Nearest TSS
ENST00000502981/Upstream/31577; ENST00000512741/Downstream/1586;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/30966, chr4-CpG: 50/Downstream/22210
Upstream sequence
TCCTGTATCACGTACCTTGAAATAGTATACTTTTCAGTATTATCACCATATTCACCAAGTCAATATTCTAACAAGATgtcagaaaacttcctgttaagag
Downstream sequence
TTTTTTTTTTTAACAGTTTTTTAAATTGCTAGAATTTCTTTTTTTCCTGGAACTGGATAAACTGTGCTATTTTCCCCATAAAATTATTACTTGCTTCTCA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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