FGFR2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018020
Fusion event
HBV-FGFR2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1092
Host Sequence
Chromosome
chr10
Cytoband
q26.13
Reference genome
GRCh37/hg19
Start
123356431/121596917 (Hg38)
End
123356431/121596917 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10F ; FRA10A ; FRA10B
Target gene
FGFR2
miRNAs that regulate target gene
hsa-mir-19b-1-5p ; hsa-mir-125b-5p ; hsa-mir-1-3p ; hsa-mir-186-5p
Nearest miRNA
hsa-mir-107/Upstream/1638325; hsa-mir-202/Downstream/820048;
Nearest TSS
ENST00000439456/Upstream/272; ENST00000447943/Downstream/1049;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/617039, chr10-CpG: 185/Downstream/185
Nearest cancer related gene
FGFR2(OG, No orient, 0)
Upstream sequence
AAATCATCAACAGATTTCAGGTTAAAGTTCTGTAAAATTGTGGTTAGAAATAAAAATAGCTCCATGCGGGCAAGTCCTTCTCCTGCACAAATTCGTTTTC
Downstream sequence
CTGAAGATAACAAAGAAAGGAAGTAGTTACTCCTTGTGTTTAACTGTGACTGTGACAAACAGTCATTTGTGACTTGCACAAACAGAATATGCAGTAAATA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate