Basic Information
VIS ID
TVIS10018021
Fusion event
HBV-LOC101927588 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
3039
Host Sequence
Chromosome
chr8
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
125259203/124246962 (Hg38)
End
125259203/124246962 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
LOC101927588
Nearest miRNA
hsa-mir-12123/Upstream/898832; hsa-mir-10400/Downstream/261553;
Nearest TSS
ENST00000518652/Upstream/75440; ENST00000517482/Downstream/436;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/477937, chr8-CpG: 34/Downstream/54480
Upstream sequence
ACAGAATACATAATCCTGAGTATTTTCCTAGGCTTCATCTAGCCCACCATGCTGCTGTTTGCACTAGACCCTGTGACATTATCCTTCCTGATAAGCTTTC
Downstream sequence
gagctacttgctctttaacttacactctacacttcccaaactctgccatggcttaggaaacacctgcttcctggagtgcttttcccatcttctctgcata
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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