Basic Information
VIS ID
TVIS10018023
Fusion event
HBV-LOC101927588 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1781
Host Sequence
Chromosome
chr8
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
125259202/124246961 (Hg38)
End
125259202/124246961 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
LOC101927588
Nearest miRNA
hsa-mir-12123/Upstream/898831; hsa-mir-10400/Downstream/261554;
Nearest TSS
ENST00000518652/Upstream/75439; ENST00000517482/Downstream/437;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/477936, chr8-CpG: 34/Downstream/54481
Upstream sequence
TGAAAGTGAAGGAGGAAGTACTTTTACCTTGCTTTGTCTGAGCAGTATAAAGCAAATAAAAGCAAGAGTTTTCTTATGGTTATACATACAAAATGAACCA
Downstream sequence
ggagctacttgctctttaacttacactctacacttcccaaactctgccatggcttaggaaacacctgcttcctggagtgcttttcccatcttctctgcat
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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