Basic Information
VIS ID
TVIS10018024
Fusion event
HBV-chrX integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1048
Host Sequence
Chromosome
chrX
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
30480637/30462520 (Hg38)
End
30480637/30462520 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRAXC
Nearest miRNA
hsa-mir-23c/Upstream/888162; hsa-let-7f-2/Downstream/2121136;
Nearest TSS
ENST00000429181/Upstream/152922; ENST00000378941/Downstream/115324;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/152969, chrX-CpG: 88/Downstream/190102
Upstream sequence
ttgaaccatgaattttaaatcattatgactaggctcaaacacatcttttggaatgaaaataggaaccattacagtcaacacatttttgtcaacaagaaac
Downstream sequence
Atttttaaataagtttttgcagagaaatggcacatatgcagaaaatgcataagtcacaattatacaagctgatgattagtcacaaagctaacacatctgt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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