Basic Information
VIS ID
TVIS10018030
Fusion event
HBV-chr12 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
398
Host Sequence
Chromosome
chr12
Cytoband
q24.32
Reference genome
GRCh37/hg19
Start
127910827/127426282 (Hg38)
End
127910827/127426282 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA12E
Nearest miRNA
hsa-let-7i/Upstream/2510623; hsa-mir-3612/Downstream/867810;
Nearest TSS
ENST00000382841/Upstream/86210; ENST00000535247/Downstream/171886;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/145312, chr12-CpG: 82/Downstream/29114
Upstream sequence
CTGTAACTTACTTTTCAGAACATCCTGTCTAATCTTCCGTTATAATCCTCTCAATCAATTTCTCTAATCTTAAAGATTTTGCCTTGGACATACCAAGATA
Downstream sequence
GTAGCCTCTCCCACCTAACCTCTGCATCCCCCAGCCTCATGTCCTGCCCCATCCCTATCCTGCCTGATCCCTGGATCTCCCTCAGATCCCCTCTTCTCAG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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