PAX7 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018033
Fusion event
HBV-PAX7 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
397
Host Sequence
Chromosome
chr1
Cytoband
p36.13
Reference genome
GRCh37/hg19
Start
19050821/18724327 (Hg38)
End
19056988/18730494 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
PAX7
miRNAs that regulate target gene
hsa-mir-27b-3p ; hsa-mir-129-5p ; hsa-mir-2355-3p ; hsa-mir-4646-3p ; hsa-mir-6740-3p ; hsa-mir-924 ; hsa-mir-4778-3p ; hsa-mir-7845-5p ; hsa-mir-5007-5p ; hsa-mir-4797-5p ; hsa-mir-4475
Nearest miRNA
hsa-mir-12136/Upstream/1446352; hsa-mir-101-1/Downstream/152708;
Nearest TSS
ENST00000473358/Upstream/92803; ENST00000437898/Downstream/129188;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/77088, chr1-CpG: 19/Downstream/53732
Upstream sequence
gagaatgatgctactcaggccaagcattgttatgcaggaatgagggctcagatgccagatattctattttctacagaagtcgTGTTTTTAAAAAGTGATT
Downstream sequence
TCTTCCTCTGCACCCTGCTGCGGCCCCCACCCACCCACCACAAACCCTGCCACAGAGCCCCAATGATGGCGATTGCCCCTTCTAATTGCAGCCACACTCC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate