Basic Information
VIS ID
TVIS10018035
Fusion event
HBV-SERPINA13P integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
832
Host Sequence
Chromosome
chr14
Cytoband
q32.13
Reference genome
GRCh37/hg19
Start
95115881/94649544 (Hg38)
End
95115881/94649544 (Hg38)
Location type
Intronic
Target gene
SERPINA13P
Nearest miRNA
hsa-mir-1260a/Upstream/701242; hsa-mir-1185-1/Downstream/488375;
Nearest TSS
ENST00000550708/Upstream/30211; ENST00000554033/Downstream/120686;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/474233, chr14-CpG: 184/Downstream/118731
Upstream sequence
ACTAAACCACCCTATACTCTATACCACTCATTTAAACACAGCTGCAGGCTCAGAACCCAGACCCGTCTTTAAACTGACTCATTTTCGGAACCGGGCCCTA
Downstream sequence
tccaatgaaaggATCCCAAACTCAAATGCCTATTGGGGCAGGTGGGCAGTAGGCAGTGATTAGAAAAGGAAAACAACAGCACAAGTTCAGTCATGACCTG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate