Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018036
Fusion event
HBV-SLC47A1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1769
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
Start
End
19469277/19565964 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-6770-3p ; hsa-mir-4730 ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3144-5p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-4467 ; hsa-mir-4749-5p ; hsa-mir-4706 ; hsa-mir-8072 ; hsa-mir-3960 ; hsa-mir-1307-3p ; hsa-mir-6889-5p ; hsa-mir-6777-5p ; hsa-mir-3189-3p ; hsa-mir-212-5p ; hsa-mir-6784-5p ; hsa-mir-4655-5p ; hsa-mir-4665-5p ; hsa-mir-5010-5p ; hsa-mir-1275 ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-6883-5p ; hsa-mir-6825-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-3616-3p ; hsa-mir-4680-5p ; hsa-mir-7155-5p ; hsa-mir-637 ; hsa-mir-4700-5p ; hsa-mir-8089 ; hsa-mir-4667-5p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-181d-3p ; hsa-mir-514a-5p ; hsa-mir-5008-5p ; hsa-mir-6851-3p ; hsa-mir-7160-3p
Nearest miRNA
hsa-mir-1180/Upstream/221390; hsa-mir-10226/Downstream/7727946;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/31585, chr17-CpG: 58/Downstream/13949
Upstream sequence
ATCTTTCACATAAACAGTTTGAGATCAAGGACGCTGGCTGCACAGACCAGTGCGGATCCAGGCAGCTGTGCCGCAACAAGGATCAATGCTCCCATGGAGA
Downstream sequence
tctcacgtcccgcctgggacatgaaatcatccctttgtccaacatctccacgctgtgtgtgctttccacccgctagttatttcagattgactgttttggt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13