ZMYND8 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018037
Fusion event
HBV-ZMYND8 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1631
Host Sequence
Chromosome
chr20
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
45913863/47285119 (Hg38)
End
45913863/47285119 (Hg38)
Location type
Intronic
Target gene
ZMYND8
miRNAs that regulate target gene
hsa-mir-548d-5p ; hsa-mir-421 ; hsa-mir-92a-3p ; hsa-mir-18a-5p ; hsa-mir-142-3p ; hsa-mir-3140-3p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p
Nearest miRNA
hsa-mir-103a-2/Upstream/118061; hsa-mir-1-1/Downstream/2578740;
Nearest TSS
ENST00000382410/Upstream/195880; ENST00000599904/Downstream/13781;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/45752, chr20-CpG: 56/Downstream/216565
Upstream sequence
TTCGGTTCCCAGCCTTCCTGTCTTCCCCCTCAGCCTGCAGGTGCGTGTCTACTGCCAGCACTTTCCAGGAGACAGAGGTCACTTGTTTCAAAGACACCTC
Downstream sequence
gtaacctgcccaaggtcttacagcaacaaagtggcatggtcaggatttgaacccaggtagtcgggctccaaagcccatgcaggtcaccactgcactgata
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate