Basic Information
VIS ID
TVIS10018040
Fusion event
HBV-chr17 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1818
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
8567087/8663769 (Hg38)
End
8567087/8663769 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1253/Upstream/476765; hsa-mir-10226/Downstream/3418130;
Nearest TSS
ENST00000595228/Upstream/33008; ENST00000585297/Downstream/81018;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/32154, chr17-CpG: 46/Downstream/81916
Nearby gene
LOC105371525(+6813) ;
Upstream sequence
TTTTTAATAGATTTTCATAGTTATAAGCCTAGAATGATAAAATTTTGTAACAATACTGTTTTTTCAGTTTTTTGAACTATGATCTTTCATAAACTTTCTG
Downstream sequence
tttgccaaggaaatgtagacagaagacacatacatcattttcaagaagaagcctaaagagccgtttcatggatccaccatcaaccatacttcctgctgcc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate