ST8SIA1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018044
Fusion event
HBV-ST8SIA1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
3537
Host Sequence
Chromosome
chr12
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
22475007/22322073 (Hg38)
End
22475007/22322073 (Hg38)
Location type
Intronic
Target gene
ST8SIA1
Nearest miRNA
hsa-mir-1244-3/Upstream/4648679; hsa-let-7i/Downstream/1890348;
Nearest TSS
ENST00000382841/Upstream/34879; ENST00000508615/Downstream/12090;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/275418, chr12-CpG: 102/Downstream/11828
Upstream sequence
TACTGTTGCACTGCTTTACTTAAAGAGGAGTTCCCGAAAGAAGACTGGTGGTTATTCTTAGGATTAGGTGATAGAGTCAGAAGGTCTTACCTGACACTTA
Downstream sequence
CTGTCCATCATGTCCAGAAAGATTCCAAGTGGTGATGCTAAGATAACATTTGGTTGATGGTAATGGAGACACTGAGATGTGATTGGTCCATGCTGTCTGA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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