Basic Information
VIS ID
TVIS10018050
Fusion event
HBV-LOC105374520 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
457
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
22681781/22680158 (Hg38)
End
22681781/22680158 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
LOC105374520
Nearest miRNA
hsa-mir-12113/Upstream/164773; hsa-mir-1243/Downstream/1840034;
Nearest TSS
ENST00000502981/Upstream/164104; ENST00000503017/Downstream/317393;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/163733, chr4-CpG: 266/Downstream/1789919
Upstream sequence
Gagtggctggttgggtgaatctgacttcaggatcttgggaggagtgcttaggtgccaatggtggtgaatgaaactgggtgatctttttgcccccaatatg
Downstream sequence
TGAAAATTGAGACCTGGAGAAGTAAACTTTGCTGCATCTACGGATTCTTTATACTACAGCGCACTTCCTCAGGGGCTCAGCTAAGCATTTCAGAAGAGTG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate