Basic Information
VIS ID
TVIS10018051
Fusion event
HBV-chr6 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1724
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
GRCh37/hg19
Start
67848333/67138440 (Hg38)
End
67848333/67138440 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/9748228; hsa-mir-10524/Downstream/4238520;
Nearest TSS
ENST00000381078/Upstream/1431215; ENST00000449928/Downstream/750899;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1043502, chr6-CpG: 37/Downstream/1496400
Upstream sequence
CTGGGAAACTACAACATTCTTAATGCCCTCTTATATTTATTCAATGAAATCTATGCACAAGTAGATCTAAGACAATTGAGTCAGGTTTAAAATGTAGTAT
Downstream sequence
aaatacacagtatttgaagtatgatgaatacataggttctaggtcaggctctaatgcttactaatggtttcacctacggggatgtgcttaacatttgtga
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate