Basic Information
VIS ID
TVIS10018054
Fusion event
HBV-chr14 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1820
Host Sequence
Chromosome
chr14
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
82696463/82230119 (Hg38)
End
82696463/82230119 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/4963829; hsa-mir-1185-1/Downstream/11718107;
Nearest TSS
ENST00000550708/Upstream/486981; ENST00000555798/Downstream/412501;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/696029, chr14-CpG: 45/Downstream/3300031
Upstream sequence
gcagtcctggagtcgccggggataatacccctgagaaggtggagtgagcagccccagtgtacaagaaaacaggtgtcttaccttttgttttgtgagggtt
Downstream sequence
CATGCAGCTCTTGCCTATGATGTGGGGAGCACCACCAAATAAAGATGAAAGTGCAAACCTTTTCTTGCTCACCTGTCTAAATTCTACTGAGTCATTGTAA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate