Basic Information
VIS ID
TVIS10018055
Fusion event
HBV-chrX integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
149
Host Sequence
Chromosome
chrX
Cytoband
q25
Reference genome
End
127098177/127964198 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/6593145; hsa-mir-105-1/Downstream/6205180;
Upstream sequence
ctgttttactacttccctttcaaATCTGCCCAAACTTTCCCAAGATGCCTATTTTCCCAGATATTCGCTGTATCATTGTACATGCATACAAAGGTATTAA
Downstream sequence
cctctaggggtggggcttcctgagagctgaattgtagtgattgttattgatcttcttggtctaacaactggagctacaggactccaggctggtgccaggg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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