Basic Information
VIS ID
TVIS10018062
Fusion event
HBV-LINC01246 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
49
Host Sequence
Chromosome
chr2
Cytoband
p25.2
Reference genome
GRCh37/hg19
Start
6768172/6628040 (Hg38)
End
6768172/6628040 (Hg38)
Location type
Intronic
Target gene
LINC01246
Nearest miRNA
hsa-mir-7158/Upstream/653308; hsa-mir-10b/Downstream/22333;
Nearest TSS
ENST00000437798/Upstream/132037; ENST00000474872/Downstream/5671;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/132012, chr2-CpG: 137/Downstream/236992
Upstream sequence
ATTAAACCTGGGACAGAGGGAGACGATAAATCAAGATCCGAGTAAATAGGGAATTAGAAGGGGGCAGACACAGTGGGCAATCCTGGAAGTGGGAGGGTGA
Downstream sequence
caggcccctgactctgggacccgtgcttcctcttcttcacATCATAAATTAAAGGGACATTCATTATTTTTAGATGATCCAAGGGCGGATCTATAGGAAG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate