Basic Information
VIS ID
TVIS10018076
Fusion event
HBV-chr3 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
849
Host Sequence
Chromosome
chr3
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
83879972/83830821 (Hg38)
End
83879972/83830821 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/4322852; hsa-mir-12124/Downstream/1554889;
Nearest TSS
ENST00000440867/Upstream/1844669; ENST00000488348/Downstream/1038754;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1022728, chr3-CpG: 48/Downstream/1128312
Upstream sequence
AAATTCCATATCAAGTAATTGTATTGGAGGATTCACCATTCCCTGACCACACCTTGCCTTTGTAAGTGTTCGAGCCTTTTCAAAAACTTCCTCTTAACAG
Downstream sequence
TTATAAAAAAACACATGTTATATAGCTAAAGAAAATATCTTTCCCATATAAATAAAAAATGTGAATTTATAAAAGATGCTAATAAAGAGAGCACCATGAA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate