Basic Information
VIS ID
TVIS10018081
Fusion event
HBV-chr14 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1717
Host Sequence
Chromosome
chr14
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
35911583/35442377 (Hg38)
End
35911583/35442377 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/4427635; hsa-mir-1185-1/Downstream/1509932;
Nearest TSS
ENST00000550708/Upstream/37628; ENST00000307169/Downstream/5248;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/37593, chr14-CpG: 249/Downstream/91015
Upstream sequence
TGTTTTCTTTTTAGTTTATATTACTTCTCAAAGATTTTTCAAATAACTTGAGCTTCTAGTTATAAATGAAATCTTTTCAAAAGTTCATATACAGTTTACT
Downstream sequence
CAGAGTGTTATATAGTTATGTTTTGCATAATCTATATGTAGTCCATATTTTTAtgtgcaaagggttaactcagcaggtgtaggtatacaaatcctgcaca
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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