CCDC102B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018083
Fusion event
HBV-CCDC102B integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1807
Host Sequence
Chromosome
chr18
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
66429147/68761910 (Hg38)
End
66429147/68761910 (Hg38)
Location type
Intronic
Target gene
CCDC102B
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-1-2/Upstream/1680224; hsa-mir-548av/Downstream/4091411;
Nearest TSS
ENST00000575820/Upstream/7327; ENST00000581520/Downstream/36170;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/46572, chr18-CpG: 174/Downstream/638363
Upstream sequence
AGCCTCTTCCCCTCCCTAAAAGTAAACTTTTTGTGATGCTATGCAAGAAGTTACATATGGATATTTATTACGTACCTACCCTCATCCCAGTATGTAAATA
Downstream sequence
tgaacttgtatatttatctgtttctcttcttcattttaaaaatcttggcgctagtttgtaagtaattccggtctgtttaaacttattttagatggtgtcc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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