hsa-mir-6844 _LIHC.png
GALNTL6 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018084
Fusion event
HBV-GALNTL6 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1884
Host Sequence
Chromosome
chr4
Cytoband
q34.1
Reference genome
GRCh37/hg19
Start
173136734/172215583 (Hg38)
End
173136734/172215583 (Hg38)
Location type
Intronic
Target gene
GALNTL6
miRNAs that regulate target gene
hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-6844 ; hsa-mir-9-5p
Nearest miRNA
hsa-mir-12113/Upstream/1029291; hsa-mir-1305/Downstream/1052577;
Nearest TSS
ENST00000502981/Upstream/163138; ENST00000457021/Downstream/50571;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/401616, chr4-CpG: 154/Downstream/953209
Upstream sequence
ATTTGTTTATAAACCTGAAGATATCAGGACTGTTACTGTAGATAGTTGAGGTAAAAATTTGTTAAGTTTATTCAAAAGATCATTTTCTAGTGCATATTGT
Downstream sequence
ttacttctatcctatcctagtctttatatttaaagtagacttgtaaataaagtttagttgagaattatgtttttatatccactctaaaaatctctgtgat
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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