C3orf67 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018088
Fusion event
HBV-C3orf67 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1384
Host Sequence
Chromosome
chr3
Cytoband
p14.2
Reference genome
GRCh37/hg19
Start
58969841/58984115 (Hg38)
End
58969863/58984137 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA3B
Target gene
C3orf67
Nearest miRNA
hsa-let-7g/Upstream/3131521; hsa-mir-12124/Downstream/1633668;
Nearest TSS
ENST00000440867/Upstream/134889; ENST00000487624/Downstream/62174;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/396939, chr3-CpG: 57/Downstream/65543
Upstream sequence
CTGACCTCCTTGAATCTCTTTAGATCTTTGAATTAAATGTCAGAACTAAAACTTTCTGGGAACGAAGACAGCTCACTGTTCAAACTCCTTCCTTTCCTTA
Downstream sequence
AGTTGGTGATAGCATTCCATCCTGCTTACTAAAATTAAATTTTCTCTACTTAGATAAAACCTTTCTTTTGAAGTGCCCAAGAGAACTTCTGCAGTAAATC
Target sequence
GAAGAATCCAGTTGGCAGGACA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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