Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018089
Fusion event
HBV-CHID1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1459
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
Start
End
904136/904136 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-210/Upstream/335938; hsa-let-7a-2/Downstream/352469;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/13630, chr11-CpG: 126/Downstream/6106
Upstream sequence
ATCCTGAATGTTCTAATTggactaggagtcaaaagatctggattttcctcttccaaaatctggtagttatgagttgtgtaactttggatcaagtctggca
Downstream sequence
CACAGTGGCCAGGTCCTTCACTCGATCCCAGGGGCTCTGGGGGGGTTCATCTTGCTGCCAGAAATGCCGAGCCTGGCTCCCTGAGGGTGGGAGGGGAGAC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13