Basic Information
VIS ID
TVIS10018090
Fusion event
HBV-chr13 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1719
Host Sequence
Chromosome
chr13
Cytoband
q12.12
Reference genome
GRCh37/hg19
Start
23461712/22887573 (Hg38)
End
23461712/22887573 (Hg38)
Location type
Intronic
Target gene
LINC00621 ; LOC105370109
Nearest miRNA
hsa-mir-4499/Upstream/2453727; hsa-mir-1267/Downstream/1274843;
Nearest TSS
ENST00000623511/Upstream/677288; ENST00000575845/Downstream/28796;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/38816, chr13-CpG: 17/Downstream/10051
Upstream sequence
caaaaagtaataaaatgctaatatatacaacatggatgaatcttgcaaaaattatgttaagtggaagaagctagacccaaaaggacgcatatagtataat
Downstream sequence
cctatttatatgaagtttcctaaatgggcaaactcatagagacagaaagtagattcgtggttgtcggtatctaaggaaaagtgggaatgaaaaatgattg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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