Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018092
Fusion event
HBV-NCOR2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1761
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
End
124913291/124428745 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-10a-5p ; hsa-mir-10b-5p ; hsa-mir-16-5p ; hsa-mir-9-5p ; hsa-mir-2110 ; hsa-mir-130b-5p ; hsa-mir-20a-5p ; hsa-mir-125b-5p ; hsa-mir-100-5p ; hsa-mir-30c-5p ; hsa-mir-4459 ; hsa-mir-6757-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-3178 ; hsa-mir-6799-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-25-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-658 ; hsa-mir-2277-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6087 ; hsa-mir-6871-5p ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-4739 ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-34a-3p ; hsa-mir-1266-5p ; hsa-mir-3197 ; hsa-mir-3612 ; hsa-mir-3937 ; hsa-mir-4274 ; hsa-mir-4313 ; hsa-mir-4443 ; hsa-mir-4518 ; hsa-mir-4530 ; hsa-mir-4802-5p ; hsa-mir-510-5p ; hsa-mir-6085 ; hsa-mir-650 ; hsa-mir-6798-5p ; hsa-mir-6807-5p ; hsa-mir-6813-5p ; hsa-mir-6858-3p ; hsa-mir-7108-3p
Nearest miRNA
hsa-let-7i/Upstream/91503; hsa-mir-3612/Downstream/486802;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1827, chr12-CpG: 28/Downstream/16581
Upstream sequence
CCAGGCTATTTAATGActttgcacatgcagttccttctgtctaaaattcacctttttcctttgtgagtctggcaaagaactactaagtagttaaacttca
Downstream sequence
GGGAGATTTGGAAGCTGGTGTGGGCTTTGGGTTCATCACAAGTTTGAGGCAGAGTCTGCACTCCTAAAGCAAAGGGGAACTCTTCCTTTTCTGGGAGAAT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13