P4HA3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018093
Fusion event
HBV-P4HA3 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
832
Host Sequence
Chromosome
chr11
Cytoband
q13.4
Reference genome
GRCh37/hg19
Start
74011666/74300621 (Hg38)
End
74011666/74300621 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
P4HA3
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-124-3p
Nearest miRNA
hsa-mir-10392/Upstream/1517029; hsa-let-7a-2/Downstream/98616;
Nearest TSS
ENST00000527297/Upstream/14366; ENST00000502071/Downstream/10741;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/129094, chr11-CpG: 38/Downstream/10762
Upstream sequence
TGAAAGACTACTGGAGCACCGTTAAGGACAAGTTCTCTGAGTTCTGGGATTTGGACCCTGAGGTCAGACCAACTTCAGCCGTGGCTGCCTGAGACCTCAA
Downstream sequence
TGCATATACATATTGATGTTACAACCGTCCCATGTTAggctgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgaggtgggcggatca
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate