Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018095
Fusion event
HBV-ZCCHC4 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
832
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
Start
End
25315502/25313880 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-1227-3p ; hsa-mir-1247-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-3160-3p ; hsa-mir-3612 ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-544b ; hsa-mir-550b-2-5p ; hsa-mir-558 ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-655-5p ; hsa-mir-7160-5p ; hsa-mir-7162-3p ; hsa-mir-124-3p ; hsa-mir-1273e ; hsa-mir-219b-3p ; hsa-mir-302f ; hsa-mir-3664-3p ; hsa-mir-3910 ; hsa-mir-3975 ; hsa-mir-4459 ; hsa-mir-4695-5p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-506-3p ; hsa-mir-510-5p
Nearest miRNA
hsa-mir-12113/Upstream/793590; hsa-mir-1243/Downstream/3505702;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/944, chr4-CpG: 76/Downstream/62972
Upstream sequence
CTTTTCACCCTAAAAGAAAATGATCTTCTTGTCCAGGAGTTGGAATAATTGGGCTACAGAGACTGAAGTCCTATGCCTCTCAACTTCTTGCTCATATACT
Downstream sequence
aaaCCCTAACAAAACAAAAAACAACCAACCAAAGAGATGGATTTAATTATGATAAATTGTGCCTAAAGCTCAAACAAATTTTATTTAAGGGCAGCGAAAA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13