GNG7 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018096
Fusion event
HBV-GNG7 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
342
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
2510793/2510795 (Hg38)
End
2510793/2510795 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
GNG7
miRNAs that regulate target gene
hsa-mir-92a-3p ; hsa-mir-3925-5p ; hsa-mir-4311 ; hsa-mir-4524a-3p
Nearest miRNA
hsa-mir-1227/Upstream/75795; hsa-let-7e/Downstream/119920;
Nearest TSS
ENST00000633603/Upstream/34439; ENST00000592525/Downstream/121159;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/15891, chr19-CpG: 27/Downstream/599
Upstream sequence
CAGCCCCTGCAGGCCTTGCAAACCCAGCTCCTGCCCCAGGCACTACCGCCACCACAGCCACAGCTGCAGCCACCGCCGTCACCACAGCAGATGCCTCCCC
Downstream sequence
aggagctgggattataatcacttgccatcacggccagctaatttttatagttttagcagagacgtggtttcaccgtgttgaccaggctggtctcgaactc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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