Basic Information
VIS ID
TVIS10018099
Fusion event
HBV-chrX integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
459
Host Sequence
Chromosome
chrX
Cytoband
q27.3
Reference genome
GRCh37/hg19
Start
145796539/146715021 (Hg38)
End
145796539/146715021 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRAXA
Nearest miRNA
hsa-let-7f-2/Upstream/687149; hsa-mir-105-1/Downstream/474683;
Nearest TSS
ENST00000429181/Upstream/887611; ENST00000438525/Downstream/94763;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/94258, chrX-CpG: 91/Downstream/1196552
Upstream sequence
tacatattcacatacatatatagtatacCAACTTATAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTCTTCCTCTAATTTCTCTAATTCTACCATTTA
Downstream sequence
ggcttaaccagaagcatgactgggagccctcaggaaacctacagtcatggtggaagatgaaggagaagcaagcacatcttaccaaggtggagcaggagac
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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