hsa-mir-4753-3p _LIHC.png
CAPN13 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018102
Fusion event
HBV-CAPN13 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1724
Host Sequence
Chromosome
chr2
Cytoband
p23.1
Reference genome
GRCh37/hg19
Start
30955553/30732687 (Hg38)
End
30955553/30732687 (Hg38)
Location type
Intronic
Target gene
CAPN13
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-148b-3p ; hsa-mir-377-5p ; hsa-mir-6809-3p ; hsa-mir-4753-3p ; hsa-mir-4279 ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-549a ; hsa-mir-942-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-4756-3p ; hsa-mir-3919
Nearest miRNA
hsa-mir-1301/Upstream/2736238; hsa-mir-10b/Downstream/1799466;
Nearest TSS
ENST00000437798/Upstream/203; ENST00000449780/Downstream/10831;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/284833, chr2-CpG: 146/Downstream/404768
Upstream sequence
ATTTCCAGTTTAACATTTACAAGAAATCAAATCTCGAGTATATTGTGGGAATTAAGGGTAGGGTGTGCAGGTCATTTCCTTCAATTCTGTAACAAAGTAG
Downstream sequence
GCCCCCTCCCTTCAGTGTCTTCTCTTTCCTGTTGGTTGTTAGGCCCCAGGAACCTAGTTCTGGAGTCTGGCCAGAGACCACGTGAAGATGCTGAAGACCC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate