Basic Information
VIS ID
TVIS10018116
Fusion event
HBV-LOC107986441 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
3069
Host Sequence
Chromosome
chr5
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
113066951/113731254 (Hg38)
End
113066951/113731254 (Hg38)
Location type
Intronic
Target gene
LOC107986441
Nearest miRNA
hsa-mir-10397/Upstream/3217339; hsa-mir-103a-1/Downstream/2524489;
Nearest TSS
ENST00000502646/Upstream/140096; ENST00000512927/Downstream/324752;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/216969, chr5-CpG: 76/Downstream/324120
Upstream sequence
tgggccggggacccgggaggggtcgggacggggcggggtccgcgcggaggaggcggagctggaaggtgaaggggcaggacgggTGCCCGGGTCCCCAGTC
Downstream sequence
ggtatgcttaagcagattccatctgagaggctgttgagaatctgcacggctccagggttgggacgctaggcccttgtagtgtgggttcactggtgggatc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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