Basic Information
VIS ID
TVIS10018117
Fusion event
HBV-chr9 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
3073
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
124571864/121809585 (Hg38)
End
124571864/121809585 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/1564535; hsa-mir-12126/Downstream/310497;
Nearest TSS
ENST00000422679/Upstream/49245; ENST00000418632/Downstream/13275;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/36337, chr9-CpG: 21/Downstream/87081
Nearby gene
LOC107987125(+988) ;
Upstream sequence
CTTCCCTTCCCAAGTGGAAAGGGAGGCAGAAGGATGCTCCAGGCGCACCCCAAACAGcagttatctgctgccatgtgacaagccaccccaaacacagtgg
Downstream sequence
TTTCACCACATTTCCAGTTTTCCAATTATAGGCCACAACTGTCTGAAGAGAGTGAAGATTGTAGTTTCATTACTCAATTCTTGTTAAAGTGACACTAGCC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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