Basic Information
VIS ID
TVIS10018119
Fusion event
HBV-chr21 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1783
Host Sequence
Chromosome
chr21
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
11129739/10382698 (Hg38)
End
11129758/10382717 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10396a/Upstream/1395033; hsa-let-7c/Downstream/3023667;
Nearest TSS
ENST00000624081/Upstream/39961; ENST00000612957/Downstream/138836;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/263758, chr21-CpG: 27/Downstream/22759
Upstream sequence
gtacagtggtgtgatctcccgcctcccaggttcaagcgattctcctgcctcggtctcctgagtagGaggtttgttacatgggaatattgtctgatgttcg
Downstream sequence
cccctcaccctgatactgagcatagtaaccaggaggttgccctgccctgccctgccttgcctttcttttcttttttttctttctttcttcttcttctTTT
Target sequence
ggtttggggtacaagtgat
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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