Basic Information
VIS ID
TVIS10018121
Fusion event
HBV-LINC01201 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1655
Host Sequence
Chromosome
chrX
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
130169205/131035231 (Hg38)
End
130169205/131035231 (Hg38)
Location type
Intronic
Target gene
LINC01201
Nearest miRNA
hsa-let-7f-2/Upstream/9664178; hsa-mir-105-1/Downstream/3134147;
Nearest TSS
ENST00000429181/Upstream/131914; ENST00000423277/Downstream/4615;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/132047, chrX-CpG: 60/Downstream/22926
Upstream sequence
ttgggtacactatttcagtggaaaggtctgaaactcaagtcttgccattcagattctcttgtcccacagggtaatcccttgatgtggtgctctccatatt
Downstream sequence
TAAATTTTGAAGTATAGTTTTTTTTCTGAAAGAAAGTTTTAATAGAGGAGCACCTTAAGGGGCATTGTAAACAGACATTTGTGACCAGTTTTACCAAGGG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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