Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018123
Fusion event
HBV-MACROD2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1093
Host Sequence
Chromosome
chr20
Cytoband
p12.1
Reference genome
Start
End
14066735/14086089 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-4469 ; hsa-mir-486-5p ; hsa-mir-660-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-618 ; hsa-mir-502-5p ; hsa-mir-4786-3p ; hsa-mir-1915-5p ; hsa-mir-6841-3p ; hsa-mir-153-5p ; hsa-mir-6808-3p ; hsa-mir-7973 ; hsa-mir-486-3p ; hsa-mir-4252 ; hsa-mir-4725-5p ; hsa-mir-6852-5p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-504-5p
Nearest miRNA
hsa-mir-103a-2/Upstream/3436394; hsa-mir-1-1/Downstream/4384526;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/89667, chr20-CpG: 50/Downstream/2487102
Upstream sequence
agagtgtgctggtatcattctaagaattctgtaagtattaactcattgtattccttacacctcatgagattaaaaaaaaaatgaggccccaaaaagttta
Downstream sequence
TTCTTCTTTTGAATAGGTTGTCAGGTGATGATTGAACTATGTAAGACAAAAGTGAAAATATAAAGAAATTATTTCAGTTATTTCAAAACTTAAGTTGTTA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13