Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018126
Fusion event
HBV-CDH23 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
49
Host Sequence
Chromosome
chr10
Cytoband
q22.1
Reference genome
Start
End
73193269/71433512 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1265/Upstream/4030102; hsa-mir-107/Downstream/357235;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/35338, chr10-CpG: 21/Downstream/228209
Upstream sequence
AGATTTCAGGTTAAAGTTCTGTAAAATTGTGGTTAGAAATAAAAATAGCTCCATGCGGGCAAGTCCTTCTCCTGCACAAATTCGTTTTCCTGAAGATAAC
Downstream sequence
AAAGAAAGGAAGTAGTTACTCCTTGTGTTTAACTGTGACTGTGACAAACAGTCATTTGTGACTTGCACAAACAGAATATGCAGTAAATAattgattaatg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13