Basic Information
VIS ID
TVIS10018128
Fusion event
HBV-LOC105371657 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1139
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
189472373/189503243 (Hg38)
End
189472373/189503243 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1K
Target gene
LOC105371657
Nearest miRNA
hsa-mir-101-1/Upstream/9064853; hsa-mir-1182/Downstream/3213085;
Nearest TSS
ENST00000473358/Upstream/597555; ENST00000419614/Downstream/272222;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2822294, chr1-CpG: 56/Downstream/3305259
Upstream sequence
ATTCACACTCTTAATTCATGGGCTAAAAAAAAACTTGATTTTGTTTAGTATTATTCTTACttttttgagacagggaatcactttgtcacccaggctgcag
Downstream sequence
tagtgcagtgcctggggcatatggatattcaacaaatagtagtgaaaataaaCTTTATGCTTATATTGCACAGCTTTCACTTTCATTGATATGTCTGATC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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