Basic Information
VIS ID
TVIS10018136
Fusion event
HBV-chrX integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
130
Host Sequence
Chromosome
chrX
Cytoband
q25
Reference genome
GRCh37/hg19
Start
127098157/127964178 (Hg38)
End
127098177/127964198 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/6593125; hsa-mir-105-1/Downstream/6205180;
Nearest TSS
ENST00000429181/Upstream/301648; ENST00000486673/Downstream/88200;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1382840, chrX-CpG: 50/Downstream/1558676
Upstream sequence
aacagtctgtgtattactttgttttcacactgttatcaagaactacctgagactgggtaatttatgaagaaaagaagttcaatcgattcataattccaca
Downstream sequence
cctctaggggtggggcttcctgagagctgaattgtagtgattgttattgatcttcttggtctaacaactggagctacaggactccaggctggtgccaggg
Target sequence
gatgtggtgctctccatatt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate