OR2A2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018140
Fusion event
HBV-OR2A2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
787
Host Sequence
Chromosome
chr7
Cytoband
q35
Reference genome
GRCh37/hg19
Start
143809744/144112651 (Hg38)
End
143809745/144112652 (Hg38)
Location type
Intronic
Target gene
OR2A2
Nearest miRNA
hsa-mir-10399/Upstream/729851; hsa-mir-153-2/Downstream/3265365;
Nearest TSS
ENST00000635602/Upstream/3137; ENST00000408899/Downstream/10524;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/210318, chr7-CpG: 59/Downstream/82829
Upstream sequence
AAAGTCATAAATCACATATCTGTTAATAAAATCATGTGTGCATGTGTTATTAACGGATTTATGCATTTGGAAGTGGACTTTCCTTTCATACTATGTATTG
Downstream sequence
TGATGAAATAATTTAGGAGTAAAAGGGAATAAGATACGGAAAGCTTTAGATCAATACTAAACTGTGTAAAAAACCCTAAAATATATTAAAGCTTTAGGAT
Target sequence
T
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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