Basic Information
VIS ID
TVIS10018146
Fusion event
HBV-chr16 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1329
Host Sequence
Chromosome
chr16
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
84213911/84180305 (Hg38)
End
84213911/84180305 (Hg38)
Location type
Intronic
Target gene
DNAAF1 ; TAF1C
miRNAs that regulate target gene
hsa-mir-30d-5p
Nearest miRNA
hsa-mir-1225/Upstream/671897; hsa-mir-11401/Downstream/1027491;
Nearest TSS
ENST00000527434/Upstream/4164; ENST00000567413/Downstream/1113;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/34687, chr16-CpG: 20/Downstream/924
Upstream sequence
ctcctagagtaaaacattggaatagctttaATGCCAGAATAGTTAATGAGCACATGCAAAACTAAGAATTACAGGGCAACTTACTGGTTTATAGCATGAA
Downstream sequence
CACCAGGGGAAGGCGCTCGTCCACTAGGTAGAGAGAGAACTGGGGCCCGAGAAGGAAGGGGGATGTGGCCGAACTTGGGAGCTGAGCTGTGTAGTGGCCC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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