Basic Information
VIS ID
TVIS10018149
Fusion event
HBV-chr7 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
3188
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
10697705/10658078 (Hg38)
End
10697705/10658078 (Hg38)
Location type
Intronic
Target gene
LOC107986766 ; MGC4859
Nearest miRNA
hsa-mir-339/Upstream/3591033; hsa-mir-10399/Downstream/7469142;
Nearest TSS
ENST00000635602/Upstream/697054; ENST00000422697/Downstream/44598;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/931492, chr7-CpG: 31/Downstream/121600
Upstream sequence
agttagcctgagtataCAGGAGTTAGAGCCTAAGCCTACTTTCTGCACACCTCTAAGGCAGGTGTCCTGGGGCCAAAAGGTGTTCAGACTTCGTTACTGT
Downstream sequence
GTTGAAGCTTTTATTTTTCTTACCTTATATTGGGCTTTTTTGCACCAAAGTGATTTGACTCTGCTCAGAAATTATGAAATTATGCAATTGTAAAAACCCT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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