Basic Information
VIS ID
TVIS10018150
Fusion event
HBV-chr9 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1718
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
139145610/136253764 (Hg38)
End
139145610/136253764 (Hg38)
Location type
Intronic
Target gene
LOC101928722 ; LOC108254693
Nearest miRNA
hsa-let-7a-1/Upstream/1402957; hsa-mir-126/Downstream/265804;
Nearest TSS
ENST00000422679/Upstream/7923; ENST00000640235/Downstream/10161;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1181, chr9-CpG: 46/Downstream/13497
Upstream sequence
TCTTCCCTTCCCAAGTGGAAAGGGAGGCAGAAGGATGCTCCAGGCGCACCCCAAACAGcagttatctgctgccatgtgacaagccaccccaaacacagtg
Downstream sequence
tcaggaggctcaggcgggaggatcacctgagcccaggatttcaaggatgcaatgagctatgatcatgccactgcactccagcctgggccacagagtgaga
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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