Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018156
Fusion event
HBV-GARNL3 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
368
Host Sequence
Chromosome
chr9
Cytoband
q33.3
Reference genome
End
130085590/127323311 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-let-7a-1/Upstream/2629513; hsa-mir-12126/Downstream/367376;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/77902, chr9-CpG: 22/Downstream/73184
Upstream sequence
GTCCTCCCACCCCCACTGAGATGTCTGTGTGATGTCTGTTTCACTCATCCCTCTGCCTTTTATAACCCTTAAGGACACTTAGGAAATGGACCTCCAAAGC
Downstream sequence
CTACAAACCACCCTCTCCTGACCCTGAAGAACTGTGGTAAGAACTGCACTTTCTGATGCAAACTCCCTGCTGCCCTGCAGGACCAGTGTTTTTGAGGGGG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13